| 名称
|
説明
|
プラットフォーム
|
ライセンス
|
開発元
|
| .NET Bio
|
A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.
|
.NET Framework
|
Apache License
|
Collaborative project
|
| AMPHORA
|
Metagenomics analysis software
|
Linux
|
GNU General Public License
|
Developer
|
| Anduril
|
Component-based workflow framework for data analysis
|
Linux, Mac OS X, Windows
|
GPL
|
University of Helsinki
|
| AutoDock
|
suite of automated docking tools
|
Platform
|
GNU GPL
|
Developer
|
| Biochemical Algorithms Library (BALL)
|
C++ library and framework for molecular modeling and visualization designed for rapid prototyping
|
Linux, Mac OS X, Windows
|
LGPL
|
BALL project team
|
| Bioclipse
|
Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP).
|
Platform
|
Eclipse Public License
|
The Bioclipse Project
|
| Bioconductor
|
R (programming language) language toolkit
|
Linux, Mac OS X, Windows
|
Artistic License 2.0
|
Fred Hutchinson Cancer Research Center
|
| BioJava
|
Java (programming language)
|
Linux, Mac OS X, Windows
|
LGPL v2.1
|
Open Bioinformatics Foundation
|
| BioJS
|
Javascript
|
Web
|
Apache License
|
-
|
| BioMOBY
|
registry of web services
|
Web
|
Artistic License
|
Open Bioinformatics Foundation
|
| BioPerl
|
Perl language toolkit
|
Cross-platform
|
Artistic License & GPL
|
Open Bioinformatics Foundation
|
| BioPHP
|
PHP language toolkit
|
Platform
|
GPL v2
|
Open Bioinformatics Foundation
|
| Biopython
|
Python language toolkit
|
Cross-platform
|
Biopython License
|
Open Bioinformatics Foundation
|
| BioRuby
|
Ruby language toolkit
|
Platform
|
GNU GPL v2 or Ruby license
|
Open Bioinformatics Foundation
|
| EMBOSS
|
Suite of packages for sequencing, searching, etc.
|
Platform
|
General Public Licence (GPL) and Library GPL
|
Collaborative project
|
| Galaxy
|
Scientific workflow and data integration system
|
Unix-like
|
Academic Free License
|
Penn State and Emory University
|
| GenePattern
|
Scientific workflow system that provides access to more than 150 genomic analysis tools
|
Unix-like (public server); Linux, Mac OS X, Windows
|
MIT license
|
Broad Institute
|
| GeWorkbench
|
Genomic data integration platform
|
Linux, Mac OS X, Windows
|
License
|
Columbia University
|
| GMOD
|
Toolkit for addressing many common challenges at biological databases.
|
Unix-like (server), Web browser (client)
|
Varies depending on tool
|
Collaborative project
|
| GenGIS
|
Application that allows users to combine digital map data with information about biological sequences collected from the environment.
|
Windows, Mac OS X
|
GPL
|
Collaborative project
|
| GenomeSpace
|
Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools
|
Web browser
|
LGPL
|
Broad Institute, Collaborative project
|
| GENtle
|
An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files
|
Platform
|
GPL
|
Magnus Manske
|
| Integrated Genome Browser
|
Java-based desktop genome browser
|
Linux, Mac OS X, Windows
|
CPL 1.0
|
GenoViz
|
| InterMine
|
Extensive data warehouse system for the analysis and integration of biological datasets
|
Cross-platform
|
LGPL
|
University of Cambridge
|
| LabKey Server
|
Open-source software platform that allows organizations to integrate, analyze and share complex biomedical data
|
Linux, Mac OS X, Windows
|
Apache License
|
LabKey Software Foundation
|
| mothur
|
Software for analysis of the 16S rRNA gene
|
Linux, Mac OS X, Windows
|
The University of Michigan
|
| PathVisio
|
a desktop software for drawing, analysis and visualization of biological pathways
|
Linux, Mac OS X, Windows
|
Apache 2.0 License
|
Maastricht University
|
| Orange
|
a component-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting
|
Linux, Mac OS X, Windows
|
GPL
|
University of Ljubljana
|
| Staden Package
|
Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin.
|
Linux, Mac OS X, Windows
|
BSD
|
Wellcome Trust Sanger Institute / Medical Research Council
|
| Taverna workbench
|
Tool for designing and executing workflows
|
Linux, Mac OS X, Windows
|
LGPL
|
myGrid
|
| UGENE
|
integrated bioinformatics tools
|
Linux, Mac OS X, Windows
|
GPL2
|
Unipro
|
| Unipept
|
Metaproteomics biodiversity analysis
|
Web browser
|
MIT License
|
Ghent University
|
