Duffy moved to Magdalene College in the University of Cambridge in 1979, and was professor of the history of Christianity from 2003 to 2014. Since 2014 he has been emeritus professor.[9] In 2004 he was elected as a fellow of the British Academy.[10]
Prizes and awards
Longman–History Today Award for book of the year (1994): The Stripping of the Altars: Traditional Religion in England 1400–1580[11]
Hawthornden Prize for Literature (2002): The Voices of Morebath: Reformation and Rebellion in an English Village[12]
Honorary fellow, St Mary's College, Twickenham (2003). (He later resigned from the position in protest of management decisions at the college made by its principal, Philip Esler)[13]
Humanism, Reform and the Reformation: The Career of Bishop John Fisher (1989; transferred to digitally printed hardback and paperback in 2008) (Editor; co-edited with Brendan Bradshaw) ISBN0521340349 (1989) ISBN978-0-521-34034-2 (2008, hardback) ISBN978-0-521-09966-0 (2008, paperback)
"The Shock of Change: Continuity and Discontinuity in the Elizabethan Church of England", in Anglicanism and the Western Catholic Tradition (2003, edited by Stephen Platten) ISBN1853115592
Marking the Hours: English People and their Prayers 1240–1570 (2006; transferred to paperback in 2011) ISBN9780300117141 (2006) ISBN9780300170580 (2011)
Fires of Faith: Catholic England Under Mary Tudor (2009; transferred to paperback in 2010) ISBN978-0300152166 (2009) ISBN9780300168891 (2010)
Saints, Sacrilege and Sedition: Religion and Conflict in the Tudor Reformations (2012; transferred to paperback in 2014) ISBN1441181172 (2012) ISBN9781472909176 (2014)
Reformation Divided: Catholics, Protestants, and the Conversion of England (2017) ISBN9781472934369
Royal Books and Holy Bones: Essays in Medieval Christianity (2018) ISBN9781472953230